CorGAT is a collection of tools to align complete assemblies of SARS-CoV-2 genomes with the reference genomic sequence, to obtain a list of polymorphic positions and to annotate the genetic variants. Functional annotation files incorporated in CorGAT are updated on a monthly basis, to cope with the constant increase in publicly available data and genomic sequences of SARS-CoV-2.
CorGAT is distributed as Galaxy Public server developed on Laniakea or it is available through Laniakea to deploy a personal server.
The paper has been published on Bioinformatics and is available here.
To cite the paper:
Matteo Chiara, Federico Zambelli, Marco Antonio Tangaro, Pietro Mandreoli, David S Horner, Graziano Pesole, CorGAT: a tool for the functional annotation of SARS-CoV-2 genomes, Bioinformatics, btaa1047, https://doi.org/10.1093/bioinformatics/btaa1047